PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013604894.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 258aa    MW: 29359.8 Da    PI: 7.5706
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013604894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.41.3e-20180214135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  XP_013604894.1 180 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 214
                     *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-16173236No hitNo description
SMARTSM004013.0E-20174224IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15178211IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.084178210IPR000679Zinc finger, GATA-type
CDDcd002029.55E-18179228No hitNo description
PfamPF003202.1E-18180214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNWLPEEEFN DSFFDDLINQ INFPLEDTTT NGEGEDWESK FQHLEPPPMD LFTTFPSEFT  60
SSHVINKEVA PVPVLKQSSS PSPPDVKVSK LFQSSSPVSV LESSDASFSP QNLISQCLAF  120
PVKGMRSKRK RPTAQRLRFL YPFEASKPEA YYSSEQHAKK QRKTSHTEAS SYDDGIVRRC  180
THCETTKTPQ WREGPNGPKT LCNACGVRFR SGRLVPEYRP ASSPTFIPSL HSNSHRKIIE  240
MRRKEGDEFD NSMIHSRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013604894.10.0PREDICTED: GATA transcription factor 11-like
SwissprotQ6DBP81e-114GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3DYH30.0A0A0D3DYH3_BRAOL; Uncharacterized protein
STRINGBra031608.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-104GATA transcription factor 11